SNiPlay : Manual Pipeline V3
Population Genomics Lab 1
Fulltext – Journal of Animal Breeding and Genomics
Filtering of VCF Files
VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
Figures and data in A sex-specific evolutionary interaction between ADCY9 and CETP | eLife
Genes | Free Full-Text | Whole Genome Sequencing Reveals Multiple Linked Genetic Variants on Canine Chromosome 12 Associated with Risk for Symmetrical Lupoid Onychodystrophy (SLO) in the Bearded Collie
Stacks: Stacks Manual
bcftools view | bcftools tutorial on how to count the number of snps and indels in a vcf file - YouTube
Workshop 3: Calling and filtering SNPs and indels.
How to visualize the content of a .vcf file? | ResearchGate
Variant calling with Freebayes | In-depth-NGS-Data-Analysis-Course
EvalAdmix - software
Variant Call Format - Wikipedia
VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
Learning the VCF format
Information processing after resequencing - ppt download
Stacks: Stacks Manual
Bcftools tutorial on How to read VCF files | indexing VCFs - YouTube
vcftools/README.md at master · vcftools/vcftools · GitHub
An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data - ScienceDirect
GitHub - chapmanb/vcftools-cpan: cpanm ready distribution of VCFtools Perl libraries
VINYL
NGS variants output and visualization: VCF and IGV Variant Calling Format (VCF) Variant Calling Format (VCF) Variant Calling For
